From: Gavin A Huttley Gavin.Huttley@anu.edu.au Sent: Tuesday, 3 October 2023 2:54 PM To: Michael Charleston michael.charleston@utas.edu.au Subject: Cogent3 workshop at Phylomania announcement
Hi đ!
The development team of cogent3https://protect-au.mimecast.com/s/RVN3C3Q870UpzOogZigneHc?domain=cogent3.org will run a half-day Data Wrangling with Cogent3 Workshop on the afternoon of 21st November 2023. This is before the start of Phylomania, and it's free đ! You can register herehttps://protect-au.mimecast.com/s/IM2TC4QZgDUBKqE2rUxaS9_?domain=forms.gle.
Read on past the signature to see workshop details.
We hope you can join us!
On behalf of the cogent3 developer team,
Gavin Huttley
________________________________ Data Wrangling with Cogent3
The workshop is geared towards developers who specialize in phylogenetic methods. Acquiring empirical data for evaluating the performance of a new method is challenging. Your choice of data has important ramifications for your evaluation of the performance of your method. While the standard strategy of recycling published data sets is convenient, this risks perpetuating biases embedded in those data sets.
We will show how cogent3https://protect-au.mimecast.com/s/RVN3C3Q870UpzOogZigneHc?domain=cogent3.org and associated tools can greatly simplify getting public data for analyses, serving the needs of phylogenetic method developers. As there is an overlap with standard phylogenetic data pre-processing workflows, users of phylogenetic (or molecular evolutionary) methods can also benefit from attending this workshop.
Workshop Content
The topics we will cover are:
* Factors for method developers to consider when designing experiments. * How to extract specific types of sequences (e.g. by homology type, sequence class, or level of divergence) from biological databases like Genbank and Ensembl. * Handling inconsistencies in biological data resources. * Multiple sequence alignment and subsequent quality control.
Prerequisites
All you need for this workshop is a laptop and some familiarity with command-line applications.
Ideally, you should be able to install software on your machine (see Computer Setuphttps://protect-au.mimecast.com/s/UJQ0C5QZjEUZL23PAcywB7p?domain=github.com on the wiki).
More workshop information
Details regarding physical location and setting up your computer before the workshop will be posted to the Cogent3 Workshop Wikihttps://protect-au.mimecast.com/s/Wuq5C6X1k7CrYq76Xf51HA3?domain=github.com.
We look forward to seeing you there!
đž cogent3's development team.
________________________________
Professor Gavin Huttley, Research School of Biology, ANU College of Science, RN Robertson Building, 46 Sullivans Creek Road, The Australian National University Canberra ACT 2600 Australia
+61 2 6125 5308
https://biology.anu.edu.au/research/groups/huttley-group-bioinformatics-mole...https://protect-au.mimecast.com/s/5QBFC71Zl7fA1w2XLcqzgE7?domain=biology.anu.edu.au
CRICOS #00120C
________________________________
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