bioinformatics-list

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165 discussions

RNA-Seq workshop
by Michael Charleston 11 Aug '16

11 Aug '16

Hello hello, Great news – COMBINE<https://combine.org.au/> has found people willing and able to run a workshop in late November on RNA-Seq expression data analysis. Andrew Phipps and I are coordinating with the lovely folk in COMBINE to bring you the absolute best in how to Do That Thing, in a TWO DAY WORKSHOP here in UTAS. There will be a small cost! It will be to cover catering (and because people are often willing to skip free events; some interesting related reading here<http://… [View More]

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Bioinformatics Club next meeting
by Michael Charleston 04 Aug '16

04 Aug '16

… of course *next meeting* is the one NEXT WEEK, which is August 11th. No meeting today, in case I inadvertently confused you! Best wishes Mike Michael Charleston Associate Professor in Bioinformatics School of Physical Sciences University of Tasmania AUSTRALIA phone: +61 3 6226 2444 University of Tasmania Electronic Communications Policy (December, 2014). This email is confidential, and is for the intended recipient only. Access, disclosure, copying, distribution, or reliance on any of it … [View More]

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Variant call tools
by Sanjay Gautam 01 Aug '16

01 Aug '16

Hi, I am currently working on next generation sequencing platform. I will be pleased to hear if someone in the group could help me get into variant call methods (particularly SNPeff, SAMtools and bcftools platform). Thank you ? Sanjay Gautam, B.Sc. MLT, M.Sc. Med. Microbiology PhD Student/School of Medicine/ Breathe Well Center University of Tasmania, 17 Liverpool Street, Hobart TAS 7000,Australia M +61416181795<tel:%2B61416181795> / E.mail: Sanjay.Gautam(a)utas.edu.au<mailto:… [View More]

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RNA-Seq Workshop
by Michael Charleston 01 Aug '16

01 Aug '16

Dear all, I’m happy to let you know that we’re now (with COMBINE<https://combine.org.au/>) investigating the feasibility of an RNA-Seq workshop to run here on Sandy Bay campus, in late November. If anyone knows of any major clashes around that time please let me know, so we can try to avoid them. I’m aware of (because I’m running) Phylomania 2016<http://www.maths.utas.edu.au/phylomania/phylomania2016.htm>, which goes 16-18 November; the RNA-Seq workshop would be after that. Best … [View More]

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Graphics
by Michael Charleston 01 Aug '16

01 Aug '16

Dear bioinformaticians et al., I’m collating graphics for the new website that will be at http://www.utas.edu.au/bioinformatics (or something close), and would love some more beautiful pictures! If you have some of your own images – photos, figures, diagrams, etc. – that you’d be happy to have on such a site, then please can you let me know? If they’re too big to email then we can use other means, no problem. The added benefit to you would be that all such images can be linked back to you. (… [View More]

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Fwd: DaSH: Software Carpentry Workshops, August-September
by Michael Charleston 29 Jul '16

29 Jul '16

Now, I’ve sent out a link to the DaSH-run Software Carpentry Workshop already; those who are interested in learning some coding (both R and python will be taught) should consider coming along! Also, if there are any of you out there with Friday mornings free, or at least available for the next couple of months, who could help out with the training, you are wonderful and invaluable people and you should definitely feel free to volunteer some of your expertise. The more one-on-one help available,… [View More] the better. Let me know if you’d like to offer some help for some of the sessions. Also, places are filling up fast. They’re already half-full… Best wishes, Michael Charleston Associate Professor in Bioinformatics School of Physical Sciences University of Tasmania AUSTRALIA phone: +61 3 6226 2444 Begin forwarded message: From: Michael Sumner <mdsumner(a)gmail.com<mailto:mdsumner@gmail.com>> Subject: DaSH: Software Carpentry Workshops, August-September Date: 29 July 2016 at 9:41:27 AM AEST To: <michael.charleston(a)utas.edu.au<mailto:michael.charleston@utas.edu.au>> Reply-To: Michael Sumner <reply-19ea1=b688fc55-c8fb-47b4-96b2-5ad3c5683bb4(a)tinyletter.com<mailto:reply-19ea1=b688fc55-c8fb-47b4-96b2-5ad3c5683bb4@tinyletter.com>> Hi DaSHers, Following on from last year's workshops, Data Science Hobart will run its second Software Carpentry Workshop on Friday mornings in August and September 2016. Please see the schedule, and register here to attend: https://datasciencehobart.github.io/2016-08-05-hobart/ The sessions start on 5 August at the IMAS waterfront building, please see the site above for all details. Happy DaSHing! Data Science Hobart <http://tinyletter.com/datasciencehobart> by Michael Sumner IMAS Waterfront Building, Castray Esplanade Hobart, Tasmania 7004 Australia Sent to michael.charleston(a)utas.edu.au <x-msg://41/#> — Unsubscribe <http://tinyletter.com/datasciencehobart/unsub?c=b688fc55-c8fb-47b4-96b2-5ad…> Delivered by [TinyLetter]<http://www.tinyletter.com/> University of Tasmania Electronic Communications Policy (December, 2014). This email is confidential, and is for the intended recipient only. Access, disclosure, copying, distribution, or reliance on any of it by anyone outside the intended recipient organisation is prohibited and may be a criminal offence. Please delete if obtained in error and email confirmation to the sender. The views expressed in this email are not necessarily the views of the University of Tasmania, unless clearly intended otherwise. [View Less]

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Bioinformatics Club: today's meeting is cancelled
by Michael Charleston 28 Jul '16

28 Jul '16

...But stay tuned for next week: Andrew Phipps has kindly offered to present a workflow (actually he said pipeline but you know I have issues with that term!) on ChIP-Seq analysis or something similar. Best wishes Mike Michael Charleston Associate Professor in Bioinformatics School of Physical Sciences University of Tasmania AUSTRALIA phone: +61 3 6226 2444 University of Tasmania Electronic Communications Policy (December, 2014). This email is confidential, and is for the intended recipient … [View More]

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Bioinformatics club: Today's meeting
by Michael Charleston 28 Jul '16

28 Jul '16

Dear all, Last chance: if you have something (anything!) to present, please let me know; or we will cancel today’s meeting. Please can someone present a paper or do a seminar in a fortnight? Best wishes Mike Michael Charleston Associate Professor in Bioinformatics School of Physical Sciences University of Tasmania AUSTRALIA phone: +61 3 6226 2444 University of Tasmania Electronic Communications Policy (December, 2014). This email is confidential, and is for the intended recipient only. … [View More]

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DataScience Hobart is hosting a Software Carpentry Workshop
by Michael Charleston 26 Jul '16

26 Jul '16

https://datasciencehobart.github.io/2016-08-05-hobart/ Michael Charleston Associate Professor in Bioinformatics School of Physical Sciences University of Tasmania AUSTRALIA phone: +61 3 6226 2444 University of Tasmania Electronic Communications Policy (December, 2014). This email is confidential, and is for the intended recipient only. Access, disclosure, copying, distribution, or reliance on any of it by anyone outside the intended recipient organisation is prohibited and may be a criminal … [View More]

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Bioinformatics @ UTAS
by Michael Charleston 21 Jul '16

21 Jul '16

Dear all, As I’ve mentioned before there is to be a web space for bioinformatics, at http://www.utas.edu.au/bioinformatics. It’s now being created for us (it fell through the cracks once it was approved, but they're back on track now). Can anyone help me out with the following? * I need some funky bioinformatics-y graphics. I have some of my own but the more the better. If you have some great high-quality graphics relating to your bioinformatics work, or organisms you are studying, and … [View More]you’re willing to have them go on the UTAS “face of bioinformatics” page, please let me know! There are some fine examples of what can be done here<http://www.utas.edu.au/research/research-rankings-and-performance> and here<http://www.utas.edu.au/land-food>, and don’t forget the sage advice on what to include, here<https://xkcd.com/773/>. * I will add my name, and Jac Charlesworth’s as “People mainly associated with bioinformatics here at UTAS”. If you’d like your home page or lab page or contact details findable on this site, please let me know and I will send the information on to the web services team. I’m not assuming you want to spend heaps of time on it, but if you want to take a more admin/leading role let me know that too! (I’m ok if you don’t; just don’t want to leave people out..) * At present the idea is to have a fairly standard format: Home / Research / News / People / Contact / Resources menus, and a link to the blog, which will be at https://blogs.utas.edu.au/bioinformatics/ and which have all the content imported from our current unofficial blog. But maybe I’m missing something! Is there something in particular that you feel we should urgently have? I’ll be able to make edits on the site so it won’t be set in stone, but it would be good to have it more-or-less right when it goes live. Perhaps a “find an expert” page, or a “career advice” or “my data are awful what do I do?” page. Speak now, or, well, later! Right that’s enough for now: I have programming to do. Michael Charleston Associate Professor in Bioinformatics School of Physical Sciences University of Tasmania AUSTRALIA phone: +61 3 6226 2444 University of Tasmania Electronic Communications Policy (December, 2014). This email is confidential, and is for the intended recipient only. Access, disclosure, copying, distribution, or reliance on any of it by anyone outside the intended recipient organisation is prohibited and may be a criminal offence. Please delete if obtained in error and email confirmation to the sender. The views expressed in this email are not necessarily the views of the University of Tasmania, unless clearly intended otherwise. [View Less]

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